DreEX6020973 @ danRer10
Exon Skipping
Gene
ENSDARG00000077073 | tanc1a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1a [Source:ZFIN;Acc:ZDB-GENE-130530-819]
Coordinates
chr6:11809286-11815354:-
Coord C1 exon
chr6:11815179-11815354
Coord A exon
chr6:11812423-11812555
Coord C2 exon
chr6:11809286-11809377
Length
133 bp
Sequences
Splice sites
3' ss Seq
TGCCGTATTCATGTTTACAGGTG
3' ss Score
8.74
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GAGCGTGTTTGACAGCAGTGGATAAAGAGGGTCTGACCCCGCTTGGGTGGGCATGTCTGAAGGGACAAAAGAAAGTGGTGGAGTTTCTGGTGGACAGAGGCGCTCAGATTGACCACACGGATAAGCACGGACGCACTCCGCTGGACCTGGCTGCTTTCTACGGAGACGCGGACATA
Seq A exon
GTGCATTATCTGGTGGAATGTGGAGCCGCGATTGAACACATGGACTACAGCGGCATGAGACCTCTGGACCGGGCCATCGGCAGCAGAAACACCTCAGTAGTGGTCACTCTGCTGAAGAAAGGGGCTAAACTGG
Seq C2 exon
GTAACGCCGCTTGGGCCATGGCCACCTCCAAGCCAGACATCCTCATCATACTTCTGCAGAGGCTCATGGAGGAGGGAAACCTGCTTTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077073-'27-31,'27-28,28-31=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(43.0=67.8),PF0002325=Ank=PU(48.5=27.1)
A:
PF0002325=Ank=PD(45.5=33.3)
C2:
PF134141=TPR_11=PU(15.2=38.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTGTTTGACAGCAGTGGAT
R:
TCCATGAGCCTCTGCAGAAGT
Band lengths:
244-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]