RnoEX6016940 @ rn6
Exon Skipping
Gene
ENSRNOG00000025394 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:RGD Symbol;Acc:1302949]
Coordinates
chr3:45907322-45910934:+
Coord C1 exon
chr3:45907322-45907497
Coord A exon
chr3:45909018-45909150
Coord C2 exon
chr3:45910843-45910934
Length
133 bp
Sequences
Splice sites
3' ss Seq
TGCTCCTGCTGCTGCTGTAGGTG
3' ss Score
7.47
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
Exon sequences
Seq C1 exon
GTGCTGCTCTTTCTTCCCTGGACAAAGAGGGCCTGTCGGCATTGAGCTGGGCTTGTCTGAAGGGTCACAGGGCAGTGGTCCAGTATCTGGTCGAAGAAGGAGCAGAAATAGACCAAACAGACAAAAATGGCCGTACTCCCTTGGACCTGGCCGCCTTCTATGGTGATGCAGAGACT
Seq A exon
GTGCTGTACCTGGTGGAGAAAGGAGCCGTGATAGAACACGTGGACCACAGTGGGATGCGCCCCCTGGACAGAGCCATCGGTTGCCGAAACACCGCTGTAGTGGTTACACTGCTGAGAAAAGGAGCCAAACTAG
Seq C2 exon
GAAATGCCGCTTGGGCGATGGCCACTTCCAAACCTGATATTCTGATCATACTTTTACAGAAATTGATGGAGGAAGGAAATGTGATGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025394-'63-37,'63-36,64-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(43.0=67.8),PF0002325=Ank=PU(48.5=27.1)
A:
PF0002325=Ank=PD(45.5=33.3)
C2:
PF134141=TPR_11=PU(16.2=41.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTCTTTCTTCCCTGGAC
R:
TCACATTTCCTTCCTCCATCAA
Band lengths:
258-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]