GgaEX1057148 @ galGal4
Exon Skipping
Gene
ENSGALG00000012570 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr7:36021618-36025210:+
Coord C1 exon
chr7:36021618-36021793
Coord A exon
chr7:36024194-36024326
Coord C2 exon
chr7:36025119-36025210
Length
133 bp
Sequences
Splice sites
3' ss Seq
TGCTTTGTTTCTTTTCACAGGTG
3' ss Score
12.02
5' ss Seq
TAGGTTAGT
5' ss Score
5.5
Exon sequences
Seq C1 exon
GTGCAACTATTTCATCTCTGGACAAAGAAGGGCTGACAGCTTTGGGCTGGGCATGTCTAAAAGGCCACAGAGAAGTGGTTCAGTATTTAGTTGAGAAAGGCGCAACAGTTGATCAGACAGACAAAAATGGACGAACACCTCTAGACCTGGCAGCTTTTTATGGAGATGCTGATATT
Seq A exon
GTGCAGTATTTGGTAGAAAAAGGAGCAATGATTGAGCATGTTGACCACAGCGGCATGCGGCCACTGGACAGAGCCATTGGATGTCGTAATACATCAGTGGTGGTTATGCTCCTGAGGAAAGGAGCTAAACTAG
Seq C2 exon
GAAATGCAGCATGGGCAATGGCCACCTCGAAACCAGATATTCTCCTCATTCTGCTGCAGAAACTCATGGAAGAAGGAAACATACTGTACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012570-'30-39,'30-38,32-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(43.0=67.8),PF0002325=Ank=PU(48.5=27.1)
A:
PF0002325=Ank=PD(45.5=33.3)
C2:
PF134141=TPR_11=PU(16.2=41.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCTCTGGACAAAGAAGGGC
R:
TCCTTCTTCCATGAGTTTCTGCA
Band lengths:
242-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]