MmuEX0046246 @ mm10
Exon Skipping
Gene
ENSMUSG00000035168 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:MGI Symbol;Acc:MGI:1914110]
Coordinates
chr2:59835392-59839066:+
Coord C1 exon
chr2:59835392-59835567
Coord A exon
chr2:59837086-59837218
Coord C2 exon
chr2:59838975-59839066
Length
133 bp
Sequences
Splice sites
3' ss Seq
TGCTGGCCCTGCTGCTGTAGGTG
3' ss Score
7.38
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
Exon sequences
Seq C1 exon
GTGCTGCTCTTTCTTCCCTGGACAAAGAGGGCCTGTCAGCATTGAGCTGGGCTTGTCTGAAGGGTCACAGGGCAGTGGTCCAGTACCTGGTCGAAGAAGGAGCAGAGATAGACCAGACAGACAAAAACGGCCGTACTCCCTTGGACCTGGCCGCTTTCTATGGTGATGCAGAGACT
Seq A exon
GTGCTGTATCTGGTGGAGAAGGGAGCCGTGATAGAACATGTGGACCACAGTGGGATGCGCCCCCTGGACAGAGCCATCGGCTGTCGAAACACTGCTGTAGTGGTTACCCTGCTTAGAAAAGGAGCCAAACTAG
Seq C2 exon
GAAATGCCGCTTGGGCGATGGCCACTTCCAAGCCTGATATTTTGATTATACTTTTGCAGAAATTGGTAGAGGAAGGAAATGTGATGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035168_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(10.1=11.9),PF127962=Ank_2=PU(47.3=74.6)
A:
PF0002325=Ank=PD(45.5=33.3)
C2:
PF127962=Ank_2=PD(3.2=9.7),PF134141=TPR_11=PU(16.2=41.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTCTTTCTTCCCTGGAC
R:
TCCTTCCTCTACCAATTTCTGCA
Band lengths:
251-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types