DreEX6023161 @ danRer10
Exon Skipping
Gene
ENSDARG00000014655 | itpr1a
Description
inositol 1,4,5-trisphosphate receptor, type 1a [Source:ZFIN;Acc:ZDB-GENE-070604-3]
Coordinates
chr6:39983195-39984177:+
Coord C1 exon
chr6:39983195-39983370
Coord A exon
chr6:39983472-39983636
Coord C2 exon
chr6:39983988-39984177
Length
165 bp
Sequences
Splice sites
3' ss Seq
ATTGTTTGCTGTCTGTGCAGGTT
3' ss Score
8.43
5' ss Seq
CTGGTCTGT
5' ss Score
3.05
Exon sequences
Seq C1 exon
GCCAGCTGGAACCTTCTCTGTCTCTGTTGCTGTGGGTTTGTTTGTTGGGCTCACTGGGCTTCGTGTTGATGTCCCCGAGGCCAAATGCAGTGCGGGTGCTGGTCATCTCCACTGTCCTGCAGTTGGGCTTCTCTGTAGGGCTGCAGCACATGCTCACACTCCTGGGAGCTTTCAAT
Seq A exon
GTTTGTAATAAGATCGTGTTCATGCTGAGCTTTGTGGGTAACCGTGGGTCATTCACCCGGGGTTATCGGGTGATGGTCATGGATAGAGAGTTCCTGTTTCATCTGCTGTACCTTCTCATCTGCATACTGGGCCTTTTTGGACACGTCTTCTTTTACAGTCTTCTG
Seq C2 exon
TTGTTTGACCTGGTGAACCGGGAAGAGACTCTTCTGAACGTCATCAAGAGTGTGACTCGAAACGGCCGCTCCATCGTCTTGACCGCAGTGCTGGGCCTCATCCTGGTCTACCTCTTTTCTATTGTTGGATATATGTTTTTCAAAGATGACTTCATCCTGGAGGTGAACCGCATCTCCAACGGCACTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014655-'56-67,'56-66,57-67=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(9.0=35.6)
A:
PF0052026=Ion_trans=FE(23.2=100)
C2:
PF0052026=Ion_trans=FE(27.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTTTGTTTGTTGGGCTCA
R:
GAGGTAGACCAGGATGAGGCC
Band lengths:
258-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]