DreEX6024660 @ danRer10
Exon Skipping
Gene
ENSDARG00000016527 | helz2
Description
helicase with zinc finger 2, transcriptional coactivator [Source:ZFIN;Acc:ZDB-GENE-120920-1]
Coordinates
chr6:58616203-58621050:+
Coord C1 exon
chr6:58616203-58616356
Coord A exon
chr6:58618593-58618760
Coord C2 exon
chr6:58620306-58621050
Length
168 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTGTTTGGCTGCAGGTA
3' ss Score
9.9
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
GTGCGGGTCGCCATTCTTTTGACTGAGGCTGGGATCAAGACAAAGGACATTGCCATTCTCACACCATATAATGCTCAAGTGGCCAAAATTAGTGAGTCTCTGCATAATAACCATATACGAGACATCACCGTCAACACCATCATGAGGAGTCAAG
Seq A exon
GTAGTGAATGGAGGTACGTCATCATGTCAACAGTGCGCTCTTGTCCCAAGTCTGAAATAGAGACACAACCACCCAAATCCTGGATTATGAAGCGGCTTGGATTCATCACCGACCCTCATCAAGTAAACGTTGGCATTACCAGAGCACAAGAAGGGCTGTGCATCATCG
Seq C2 exon
GAAATGAGAACTTGCTGCGCTGTAGTTCCTTATGGAGGAAACTTCTGAATCATTATCAGGAGAAAGGATGTGTGGTGAATCCTGCCCGGCTCATCCAAGTCCGACAACCCCCAAGAAGAACTGCTAGAAGATGATGTGCATGATGAATACGCACTCATATTAAGTCATTATTATTATAGCACAATTTTCAAAGCAAGCATTTGCACCTATCAGGTATGTTCATAAGCTATTAGGTTATGAATATCATGAAATGACCACTGATGGCACTTTATATATTAATCTTCATTACATTCTGTTGATTGTTGTACCTTTTTTAAATGAGCTTATATTTATCTCTCTGTTTTATGTCTTAATCTTTATAATATTTCAAGTTTGCACAGCTTAAAGGCAAAAAAGACATTCCATTTGTTTAAAAAAATATTAATAATTCTGTATATAAAAGATAAACGTGAGGATAAAGTGAGATTTCTCCACATGTTACTATGAAATGAGTTTTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016527-'21-21,'21-20,22-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.205
Domain overlap (PFAM):
C1:
PF130871=AAA_12=FE(25.1=100)
A:
PF130871=AAA_12=FE(27.6=100)
C2:
PF130871=AAA_12=PD(1.5=6.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAGGCTGGGATCAAGACA
R:
GTTCTTCTTGGGGGTTGTCGG
Band lengths:
254-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]