HsaEX6079222 @ hg19
Exon Skipping
Gene
ENSG00000130589 | RP4-697K14.7
Description
Peroxisomal proliferator-activated receptor A-interacting complex 285 kDa protein [Source:UniProtKB/Swiss-Prot;Acc:Q9BYK8]
Coordinates
chr20:62189439-62191680:-
Coord C1 exon
chr20:62191524-62191680
Coord A exon
chr20:62191281-62191448
Coord C2 exon
chr20:62189439-62190723
Length
168 bp
Sequences
Splice sites
3' ss Seq
CCTCACCTCCCATCCCGCAGGGA
3' ss Score
9.94
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GTCCGTATCACCAAGCAGCTGACCCTGGGGAGGACCGTAGAGCCCCAGGACATCGCCGTCCTCACGCCCTACAACGCGCAGGCCTCTGAGATCAGCAAGGCCCTTCGGCGAGAGGGCATCGCCGGGGTGGCCGTGTCCTCCATCACCAAGAGCCAGG
Seq A exon
GGAGCGAGTGGCGCTATGTGCTGGTGAGCACCGTCCGCACCTGTGCCAAGAGCGACCTGGACCAGCGGCCCACCAAGAGCTGGCTCAAGAAGTTTCTGGGCTTCGTTGTGGACCCCAACCAAGTGAATGTGGCTGTCACGCGGGCCCAGGAGGGGCTCTGCCTGATCG
Seq C2 exon
GAGACCACCTCCTTCTGCGCTGCTGCCCCCTCTGGCGTAGCCTCCTGGACTTCTGCGAGGCTCAGCAGACCCTCGTGCCTGCCGGCCAGGTGCGCGTCTGCAGGAGGCCAACTATGCCTTCCTGAAGAGCCCTCTCCACCTGCAAGGTGCCAGGACTGGGAGGGAAAGTCCAGGGCCCCCCCACCCTCCCCACCACCCTCCGCCATCAGCCTGCCTGGGCCAGCCTGCCTCCTGGCCTCAGGATCTCCCTGGGGCAGGAAGTGGGTGGACTTGGAGGAGGAACGGCAAGGGCCGGTCCCCACACTCTTGCTCCTCCTGGGCATCTGGGGACAGGAACACCTCTCAGGGTGGCCAAGAGGGGCTTCCTTGGGACCAGTGCAAGGAAGTTCTGCTGTCCCTGGGAAGTCTCAGAACCAGGAAGGAAACCCTGTGGAGGCTGCCCTTTGACCTTTGGACGCCACCTGTAATCACTCTGGATGGTGTCTGTGGAGTTCAGGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130589-'22-23,'22-22,23-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF130871=AAA_12=FE(25.1=100)
A:
PF130871=AAA_12=FE(27.1=100)
C2:
PF130871=AAA_12=PD(1.4=7.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAGATCAGCAAGGCCCTT
R:
CCTGGACTTTCCCTCCCAGTC
Band lengths:
247-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)