GgaEX0008716 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr20:9727545-9731643:+
Coord C1 exon
chr20:9727545-9727763
Coord A exon
chr20:9728522-9728689
Coord C2 exon
chr20:9729181-9731643
Length
168 bp
Sequences
Splice sites
3' ss Seq
GGTTCATTTGTGCTTTCTAGGAA
3' ss Score
8.65
5' ss Seq
TAGGTGGGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
CACAAAAACATCTGTGAGTTCCCATCCCAGGAGTTCTATGAACATCGCCTGAAAACCTGTCCCCAGCTTCTTCGCATACCCAGCGTCCTATACCACAAGAATAACCGCTGCTGCCCCATCATCTTCGGGCACGTGGAGGGGAAGGAGCAGAGCCTCGTGATTTCCACCGAGGAAGGAAATGAGAACTCCAAAGCTAACCCAGAAGAAGTGGAGCAGGCG
Seq A exon
GAAGTGAATGGAGATATGTGATCCTGTCAACCGTACGCTCCTGCTCTCGACACGAGATCGACAAGAAGCCCACCAAGAGCTGGCAGAAGAAACACCTGGGTTTTGTCACTGACCCAAACCAGGTCAATGTCGCCATCACCCGTGCTCAGGAAGGACTCTGCATTATAG
Seq C2 exon
GGAACCGATACCTCCTGGAGTGCAACCCTTTGTGGAGGAGACTGCTCCAGCACTACATAGATCATAACTGCTATACGTCAGGCCAAGAGATTCGCGTCAGGAGGACTTCACCCTTCCGCCGATGAAGATGAGTTATGCCTTGATGAGCTCGTCCCTCTTCATCCAAACTGTGCTACGCGTGCCTTGGGAAGGACGCAATCTTTCCATTACTGGGACAGAAACCACCACACGAGTCAAATGCACTGGGAAGGTCGGGATCTCTCCCTGCATGTTGACAGCTCATTCTCAAGATGTGCTTTGGTGACTTGTTTTTTGTATCGCCGCAACCTTGTATAGGAACTTTCACCTCTAGCAAACCAAAAAGCATTGGAAGGGGGTGGATGGGCAAGTGTGACTTTATTGATGATTATTTTTTTTTAACTAGAAGATGCTCAGTGCAGCCACCGTCCTACCTGTTAGTGCAGCTGTGCTTAGGGGACCAAACACATATTCCATTTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006138_MULTIEX2-2/2=C1-C2
Average complexity
C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.260 A=0.018 C2=0.000
Domain overlap (PFAM):
C1:
PF130871=AAA_12=FE(34.8=100)
A:
PF130871=AAA_12=FE(27.1=100)
C2:
PF130871=AAA_12=PD(1.4=7.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAGCGTCCTATACCACAA
R:
TCCTCCTGACGCGAATCTCTT
Band lengths:
247-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]