MmuEX6107664 @ mm9
Exon Skipping
Gene
ENSMUSG00000027580 | BC006779
Description
cDNA sequence BC006779 [Source:MGI Symbol;Acc:MGI:2385169]
Coordinates
chr2:180962320-180964085:-
Coord C1 exon
chr2:180963929-180964085
Coord A exon
chr2:180963660-180963827
Coord C2 exon
chr2:180962320-180963574
Length
168 bp
Sequences
Splice sites
3' ss Seq
ATCTCCTCTCTGCCTCCCAGGGA
3' ss Score
9.39
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
GTCCGCATCATAAAGCAGTTGACCCTGGATCGGACGGTGGATCCCAAAGATATTGCTGTCCTTACACCCTACAATGCACAGGCTGCTGCAATCAGTAGGGGCCTCATGCAAAGAGGAGTCACCGGAGTGACTGTGACCTCTATTACCAAGAGCCAGG
Seq A exon
GGAGTGAGTGGCGCTATGTGATAGTGAGTACCGTCCGAACATGCCCCAGGAGTGATGTGGACCAGCGGCCAACAAAGAGCTGGCTCAAGAAGTTTCTGGGCTTTGTTGTGGACCCCCACCAAGTAAACGTGGCCATCACCCGGGCCCAGGAGGCGTTGTGCATCATTG
Seq C2 exon
GGGACCATCTACTGCTACGCTGCTGCCCACTCTGGCACCGTCTCCTAGACTTCTGTGAGGCTCAACACAGCCTGGTGTCCGCTGAGAAGGTGAGGGTCCAGAGAAAATCTGCTCTGTCTTCTTGAGGAACCCCTACCTGCCCAGCCTTTGATGTACCATCAACTGAGGGTATGTCCCTCATTCTTCTATGCCAAGGTCCTGGGCATACAGAGGATTGCCACAGGTCACAGTCACAGCTCAAATTAGTCAACCACTTCTGCTGTCTTCTTGGGAAAGGCCCTGGTATTGGCTGCAGTCATGTAGCAGTGACAGTCTTATGGGTGGTGGCTGCTTCCTGTGCTGGAAGCAGGCTTAATAATGATGACCTTCCTGTTTGTACTTGGACTTGAATGGAGGGGAAAGAGCTGGAGGTCGGCCCCTTTCTCCCAACTCCCTTTGCTTTTCTGGGGCATTTGATGACTGGGACACCTCTTAGTGGTCACAGAGGACCCCAGGGACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027580-'20-22,'20-21,21-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.006
Domain overlap (PFAM):
C1:
PF130871=AAA_12=PD(9.3=45.5),PF130871=AAA_12=PU(25.0=90.9)
A:
PF130871=AAA_12=FE(70.0=100)
C2:
PF130871=AAA_12=PD(3.8=7.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGAGTGACTGTGACCTCTA
R:
TATGCCCAGGACCTTGGCATA
Band lengths:
243-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: