MmuEX6107664 @ mm10
Exon Skipping
Gene
ENSMUSG00000027580 | Helz2
Description
helicase with zinc finger 2, transcriptional coactivator [Source:MGI Symbol;Acc:MGI:2385169]
Coordinates
chr2:181227615-181229380:-
Coord C1 exon
chr2:181229224-181229380
Coord A exon
chr2:181228955-181229122
Coord C2 exon
chr2:181227615-181228869
Length
168 bp
Sequences
Splice sites
3' ss Seq
ATCTCCTCTCTGCCTCCCAGGGA
3' ss Score
9.39
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
GTCCGCATCATAAAGCAGTTGACCCTGGATCGGACGGTGGATCCCAAAGATATTGCTGTCCTTACACCCTACAATGCACAGGCTGCTGCAATCAGTAGGGGCCTCATGCAAAGAGGAGTCACCGGAGTGACTGTGACCTCTATTACCAAGAGCCAGG
Seq A exon
GGAGTGAGTGGCGCTATGTGATAGTGAGTACCGTCCGAACATGCCCCAGGAGTGATGTGGACCAGCGGCCAACAAAGAGCTGGCTCAAGAAGTTTCTGGGCTTTGTTGTGGACCCCCACCAAGTAAACGTGGCCATCACCCGGGCCCAGGAGGCGTTGTGCATCATTG
Seq C2 exon
GGGACCATCTACTGCTACGCTGCTGCCCACTCTGGCACCGTCTCCTAGACTTCTGTGAGGCTCAACACAGCCTGGTGTCCGCTGAGAAGGTGAGGGTCCAGAGAAAATCTGCTCTGTCTTCTTGAGGAACCCCTACCTGCCCAGCCTTTGATGTACCATCAACTGAGGGTATGTCCCTCATTCTTCTATGCCAAGGTCCTGGGCATACAGAGGATTGCCACAGGTCACAGTCACAGCTCAAATTAGTCAACCACTTCTGCTGTCTTCTTGGGAAAGGCCCTGGTATTGGCTGCAGTCATGTAGCAGTGACAGTCTTATGGGTGGTGGCTGCTTCCTGTGCTGGAAGCAGGCTTAATAATGATGACCTTCCTGTTTGTACTTGGACTTGAATGGAGGGGAAAGAGCTGGAGGTCGGCCCCTTTCTCCCAACTCCCTTTGCTTTTCTGGGGCATTTGATGACTGGGACACCTCTTAGTGGTCACAGAGGACCCCAGGGACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027580-'26-42,'26-40,27-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.005
Domain overlap (PFAM):
C1:
PF130871=AAA_12=FE(25.1=100)
A:
PF130871=AAA_12=FE(27.1=100)
C2:
PF130871=AAA_12=PD(1.4=7.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGAGTGACTGTGACCTCTA
R:
TATGCCCAGGACCTTGGCATA
Band lengths:
243-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types