DreEX6024665 @ danRer10
Exon Skipping
Gene
ENSDARG00000016527 | helz2
Description
helicase with zinc finger 2, transcriptional coactivator [Source:ZFIN;Acc:ZDB-GENE-120920-1]
Coordinates
chr6:58604790-58605389:+
Coord C1 exon
chr6:58604790-58604878
Coord A exon
chr6:58605022-58605165
Coord C2 exon
chr6:58605252-58605389
Length
144 bp
Sequences
Splice sites
3' ss Seq
AAACTGTATCTCTCCAAAAGGAT
3' ss Score
5.53
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
Exon sequences
Seq C1 exon
GCGCAAAGAAAATGCAATTGACAGTCTAACCAAAGCCAACCAGCTTGTAAAAAACATTGCCATGGGCAGGAGAATCACTTCGGACAGAG
Seq A exon
GATGTAAAATACCAAATCAGAATACAGGCAGGTTTGAGATCAACAGTTATCATCCTTCTGGGTTATCCCATCTAAACAACAGCCAAAGTAAAGCAATAAGAGAAGCACTGACTAACCCATTCACACTTATCCAAGGACCACCGG
Seq C2 exon
GGACTGGAAAAACTGTTGTTGGTGTCCATATTTTGTACTGGCTGCACAAGAATATCCAACAGCTCCAAGCTTCTGGTTCAAAGAAGAGAGCTATTCTGTACTGTGGCCCGTCAAATAAATCTGTTGATGTTGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016527-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.129 A=0.306 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF130861=AAA_11=PU(10.4=51.0)
C2:
PF130861=AAA_11=FE(19.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCAAAGAAAATGCAATTGACA
R:
CTGCAACAACATCAACAGATTTATT
Band lengths:
227-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]