MmuEX6107658 @ mm10
Exon Skipping
Gene
ENSMUSG00000027580 | Helz2
Description
helicase with zinc finger 2, transcriptional coactivator [Source:MGI Symbol;Acc:MGI:2385169]
Coordinates
chr2:181230759-181234312:-
Coord C1 exon
chr2:181231794-181234312
Coord A exon
chr2:181231008-181231139
Coord C2 exon
chr2:181230759-181230920
Length
132 bp
Sequences
Splice sites
3' ss Seq
CACTCACACTCCTACCCCAGCAT
3' ss Score
3.8
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
TGGTCCCTGGCTTCAGCCTCTGTCTGGAGCACATGGAACGGCCAGGTGACTGCTTTTCAAGCCATGTGCACCAGGCTCTGCAAGACCAGTACCTTCAAGTCGGCGAGTACTCAGGTGCCTGGGGGCCACGCTGCGCCCTGGAGTCGCTCACCAATGCTGTTACAGAAAACGACTCCATTGTGCTGCACGATGTGCATATCTCTTGGGACACATCCCAGGGGCAGTTGCAGGGCACCTTCCAGCTGGAAGCTGCTTTTCTCCAGGAGAAATGCATCAACATCCACTTTGGCTGTTGCTACCTCTGCATTCGGCTGGAGGGGCTCCCTCTCCCCCTAGATAGCTCACTCCCTGGGCCTAGTGGCCTTGGCCCCTTCCTGAACATTGACCCCAATACATATACCTGGGTGGCCCATGGGCTGTCTGGTGACTGGGACCATGAACTGGCTGGTGGTGACTGGGACCAGGAGAATGTGGATGATCGGCAGGAGGCGCCCAAGCAG
Seq A exon
CATCTACCAGCAGGTTCTTGGAGCGGCAGAACTACAACATCCCTGCTGGACATCATAAGCTGAACCAGAGCCAGGACAGGGCTGTCAGGAGCGCTCTGCAGAAACAGTTCACAGTCATCCAGGGCCCACCAG
Seq C2 exon
GCACTGGGAAGACCGTTGTGGGCTTCCACATTGTGTACTGGTTCCACAGGTCAAACCAGGAGCAGATGCCAACTGACAGCAGCCCGAGTGGAGAGGAGCAGCTGGGGGGCCCATGTGTCTTATACTGTGGACCCTCCAACAAGTCTGTGGATGTCCTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027580_MULTIEX1-2/2=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.689 C2=0.230
Domain overlap (PFAM):
C1:
NA
A:
PF130861=AAA_11=PU(10.0=55.6)
C2:
PF130861=AAA_11=FE(21.6=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGTGACTGGGACCATGAA
R:
CTCCCAGGACATCCACAGACT
Band lengths:
243-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types