MmuEX6107658 @ mm9
Exon Skipping
Gene
ENSMUSG00000027580 | BC006779
Description
cDNA sequence BC006779 [Source:MGI Symbol;Acc:MGI:2385169]
Coordinates
chr2:180965464-180966207:-
Coord C1 exon
chr2:180965936-180966207
Coord A exon
chr2:180965713-180965844
Coord C2 exon
chr2:180965464-180965625
Length
132 bp
Sequences
Splice sites
3' ss Seq
CACTCACACTCCTACCCCAGCAT
3' ss Score
3.8
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
CCGCAAGGAAGAAGCAGTGCGTCAACTGAAAACAGCATCCCCATTGGTCATTAGCATCGCCTTGGGCCTGCCTATCCCTGAGATCCGCTGGCCAATATCTGGGCCCCGTCGCTTAGTATCTGAGCTCCGTTGGCCAATACCCGGGCCCCGTCGCCCAGTATCTGAGCCCCATCGCCCAATGTCCGGGCCCTGTGGCCCAATATCTGAACCGTGTCGCTCAATCCCCGAGCCCTGCCGCGGCAACTGGCCTCGCCAGCATTCTTTTCACAAGG
Seq A exon
CATCTACCAGCAGGTTCTTGGAGCGGCAGAACTACAACATCCCTGCTGGACATCATAAGCTGAACCAGAGCCAGGACAGGGCTGTCAGGAGCGCTCTGCAGAAACAGTTCACAGTCATCCAGGGCCCACCAG
Seq C2 exon
GCACTGGGAAGACCGTTGTGGGCTTCCACATTGTGTACTGGTTCCACAGGTCAAACCAGGAGCAGATGCCAACTGACAGCAGCCCGAGTGGAGAGGAGCAGCTGGGGGGCCCATGTGTCTTATACTGTGGACCCTCCAACAAGTCTGTGGATGTCCTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027580-'11-14,'11-11,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.456 A=0.689 C2=0.244
Domain overlap (PFAM):
C1:
PF130861=AAA_11=PU(11.4=31.5)
A:
PF130861=AAA_11=PU(10.0=55.6)
C2:
PF130861=AAA_11=FE(39.4=100)
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCCCAATATCTGAACCGT
R:
CTCCCAGGACATCCACAGACT
Band lengths:
243-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: