GgaEX7009127 @ galGal4
Exon Skipping
Gene
ENSGALG00000006138 | HELZ2
Description
helicase with zinc finger 2, transcriptional coactivator [Source:HGNC Symbol;Acc:HGNC:30021]
Coordinates
chr20:14271987-14272986:+
Coord C1 exon
chr20:14271987-14272072
Coord A exon
chr20:14272460-14272591
Coord C2 exon
chr20:14272819-14272986
Length
132 bp
Sequences
Splice sites
3' ss Seq
ATGTCTCTTTGCTCTAACAGTCA
3' ss Score
8.76
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GCGGAAAGAAAATGCAATTTGGAAGCTCCAGAATGCCTCCGATCTCGCTAAAAGCATTGCCCTTGGCCATGAACCTCCATCAAAAG
Seq A exon
TCACCAAGTCCAAAATCCTGCAGCAAAAATCCTTTGATCTCCCTGGCAGCCAAAGGAAGCTCAACCCAAGTCAGAACAAGGCTGTGCTAAATGCCTTAACAAAACCCTTCACGCTCATCCAAGGCCCACCAG
Seq C2 exon
GTACAGGCAAAACTGTTGTTGGAACTCACATTGTCTACTGGTTCCATAAGCTGAATGAGGAGGCCACCGCGAAGGAGCAACTGCCGTGCCCTGATGAGGATGAGCCCCAAGGGAAAAAGTGCATCTTGTATTGTGGCCCATCCAACAAGTCTGTTGATGTTGTTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006138-'9-12,'9-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.200 C2=0.175
Domain overlap (PFAM):
C1:
NO
A:
PF130861=AAA_11=PU(10.0=55.6)
C2:
PF130861=AAA_11=FE(22.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGAAAGAAAATGCAATTTGGA
R:
CAGCAACAACATCAACAGACTTGT
Band lengths:
254-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]