RnoEX6020749 @ rn6
Exon Skipping
Gene
ENSRNOG00000013267 | Helz2
Description
helicase with zinc finger 2 [Source:RGD Symbol;Acc:1306056]
Coordinates
chr3:176733123-176733872:-
Coord C1 exon
chr3:176733601-176733872
Coord A exon
chr3:176733378-176733509
Coord C2 exon
chr3:176733123-176733284
Length
132 bp
Sequences
Splice sites
3' ss Seq
ACCTACACCCCCCACCCCAGTAC
3' ss Score
3.56
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
CCGCAAGGAAGAAGCTGTGCGTGGACTGAAAAACGCATCCCCACTGGTCATTAGCATCGCCTTGGGCTTGCCGATCCTTGAGCCCCATTGGCCGATCCCTGAGCCCCGTCACCAGATATCCTGGCCCCGTCACCAGATATCCTGGCCCCGTCACCCAATATCTGGGCCCTGTCTCCCAGTATCTGGGCTCTGTCTCCCAGTATCCGGGCTCTGCCATCCAATCCCTGAGCCCTGTCGCCGCGGCTGGCCTCCCCAGCATTCTTCCCGCAAGG
Seq A exon
TACCTACCAGCAGGTTCTTGGAGCGGAAGAACTACAACATCCCCGGTGGACATCATAAGCTGAACCAGAGCCAGGACAAGGCTGTCAGGAGTGCTCTGCAGAAGCAATTCACAGTCATCCAGGGCCCACCAG
Seq C2 exon
GCACAGGGAAGACGGTTGTGGGCTTCCACATCGTGTACTGGTTCCACAGGTCAAACCAGGAGCAGATGCCAACTGGCAGCAGCCCTAGTGAAGAGGAAAAACTGGGGGGCCCGTGTGTCCTATACTGTGGTCCCTCCAACAAGTCCGTGGATGTCCTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013267-'12-11,'12-10,13-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=0.622 C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
PF130861=AAA_11=PU(13.4=55.6)
C2:
PF130861=AAA_11=FE(29.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCCCCGTCACCAGATATC
R:
TTGGCATCTGCTCCTGGTTTG
Band lengths:
245-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]