DreEX6025762 @ danRer10
Exon Skipping
Gene
ENSDARG00000005590 | mtf2
Description
metal response element binding transcription factor 2 [Source:ZFIN;Acc:ZDB-GENE-060512-94]
Coordinates
chr2:10827454-10829622:-
Coord C1 exon
chr2:10829499-10829622
Coord A exon
chr2:10827722-10827789
Coord C2 exon
chr2:10827454-10827624
Length
68 bp
Sequences
Splice sites
3' ss Seq
TTTAACTTTTTTTTTTGTAGCTT
3' ss Score
9.58
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
GGTAGACGTTGCACACCTGAGCCTCTATAACCTGAGCGTCATTCATAAAAAGAAATATTTTGACTCTGAGCTTGAACTGATGACTTACATCAATGAAAACTGGGACCGGCTTCAGCTTGGCGAG
Seq A exon
CTTGCAGAGACTCCGAGAGCAGAACGATATGAATGCATTCTGGAAGCACTTAACAACAACCTCGACAT
Seq C2 exon
GTTCATGTCAGGTAAAGAGATCAAGAAGAAGAAACACCTATTTGGCTTACGAATCCGCTTCCCACCAGCCCCTCAGAGCTCCGAGCTCCTGTCTGACCGAGAGCCGGAAAAAGCCTCCCACGAGATCAAAATCAAAGGCAGGAAGGCCACCAAACCCCCTCTTTCATCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005590-'12-14,'12-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.569
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCACACCTGAGCCTCTAT
R:
GGAAGCGGATTCGTAAGCCAA
Band lengths:
179-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]