GgaEX1037344 @ galGal4
Exon Skipping
Gene
ENSGALG00000005911 | MTF2
Description
metal-response element-binding transcription factor 2 [Source:RefSeq peptide;Acc:NP_989839]
Coordinates
chr8:12943843-12947007:-
Coord C1 exon
chr8:12946884-12947007
Coord A exon
chr8:12944392-12944459
Coord C2 exon
chr8:12943843-12944013
Length
68 bp
Sequences
Splice sites
3' ss Seq
AATTTCTTAATTCTCCACAGCTG
3' ss Score
8.54
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
GGTAGATATAGCACATCTATGCCTTTACAACCTAAGTGTTATTCATAAGAAGAAATACTTTGATTCGGAGCTTGAACTCATGGCGTACATAAATGAAAACTGGGATAGATTACATCCTGGTGAG
Seq A exon
CTGGCAGATACACCAAAATCTGAAAGATATGAGCATGTACTGGAGGCATTAAATGATTACAAGACCAT
Seq C2 exon
GTTTATGTCTGGAAAAGAAATAAAGAAAAAGAAGCATTTGTTTGGCTTGAGAATTCGTGTTCCTCCTGTGCCGCCAAATGCTGCTTTAAAGGCTGAGAAAGAGCCAGAAGGAACTTCTCATGAGTTCAAAATTAAAGGCAGAAAATCATCTAAACCAATCCCTGATGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005911-'19-18,'19-16,21-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.569
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000009507fB9596
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGGAGCTTGAACTCATGGC
R:
TCCTTCTGGCTCTTTCTCAGC
Band lengths:
173-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]