MmuEX0029980 @ mm10
Exon Skipping
Gene
ENSMUSG00000029267 | Mtf2
Description
metal response element binding transcription factor 2 [Source:MGI Symbol;Acc:MGI:105050]
Coordinates
chr5:108094125-108104318:+
Coord C1 exon
chr5:108094125-108094248
Coord A exon
chr5:108099119-108099186
Coord C2 exon
chr5:108104266-108104318
Length
68 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTTGATACTTCACAGCTG
3' ss Score
7.41
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
GGTAGATATAGCACACCTATGCCTTTACAACCTAAGTGTTATTCACAAGAAGAAATACTTTGATTCTGAACTTGAGCTTATGACATACATTAATGAAAACTGGGATAGATTGCACCCTGGAGAG
Seq A exon
CTGGCAGACACACCCAAATCTGAAAGATATGAGCATGTTCTGGAGGCATTAAATGATTACAAGACCAT
Seq C2 exon
GATAAGGAATCAGTTTCAGAGAATCCTACGTTGGATTTACCTTGTTCTATAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029267_MULTIEX2-2/5=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=0.007 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACACCTATGCCTTTACAACCT
R:
CCTATAGAACAAGGTAAATCCAACGT
Band lengths:
167-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types