HsaEX0040462 @ hg19
Exon Skipping
Gene
ENSG00000143033 | MTF2
Description
metal response element binding transcription factor 2 [Source:HGNC Symbol;Acc:29535]
Coordinates
chr1:93586106-93599365:+
Coord C1 exon
chr1:93586106-93586229
Coord A exon
chr1:93592789-93592856
Coord C2 exon
chr1:93599260-93599365
Length
68 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTTGATACTTCACAGCTG
3' ss Score
7.41
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
GGTAGATATAGCACACCTATGCCTTTACAACCTAAGTGTTATTCATAAGAAGAAATACTTTGATTCTGAACTTGAGCTTATGACATACATTAATGAAAACTGGGATAGATTGCACCCTGGAGAG
Seq A exon
CTGGCAGACACACCAAAATCTGAAAGATATGAGCATGTTCTGGAGGCATTAAATGATTACAAGACCAT
Seq C2 exon
GGAAGTAAGCAATGGCATAGAAAAAAAAGGAAAGAAAAAATCTGTAGGTCGTCCACCTGGCCCATATACAAGAAAAATGATTCAAAAAACTGCTGAGCCACTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143033_MULTIEX2-3/4=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.008 A=0.022 C2=0.917
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACACCTATGCCTTTACAACCT
R:
TATATGGGCCAGGTGGACGAC
Band lengths:
182-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)