RnoEX6041413 @ rn6
Exon Skipping
Gene
ENSRNOG00000000075 | Mtf2
Description
metal response element binding transcription factor 2 [Source:RGD Symbol;Acc:1304727]
Coordinates
chr14:2665395-2675636:-
Coord C1 exon
chr14:2675513-2675636
Coord A exon
chr14:2667660-2667727
Coord C2 exon
chr14:2665395-2665565
Length
68 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTCGATACTTCACAGCTG
3' ss Score
7.36
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
GGTAGATATAGCACACCTATGCCTTTACAACCTAAGTGTTATTCACAAGAAGAAGTACTTTGACTCTGAACTTGAGCTTATGACATACATTAATGACAACTGGGACAGATTGCACCCTGGAGAG
Seq A exon
CTGGCAGACACGCCCAAATCTGAAAGATATGAGCATGTTCTGGAGGCATTAAATGATTACAAGACCAT
Seq C2 exon
GTTTATGTCTGGGAAAGAAATAAAGAAGAAGAAGCATTTGTTTGGGTTGCGAATTCGTGTTCCTCCTGTGCCACCAAATGTGGCTTTCAAAGCAGAGAAAGAACCTGAAGGAACATCCCATGAATTTAAAATTAAAGGCAGAAAGGCATCCAAACCTACATCTGACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000075-'19-21,'19-19,21-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.569
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000000086fB9074
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGATTGCACCCTGGAGAG
R:
GGTTTGGATGCCTTTCTGCCT
Band lengths:
177-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]