DreEX6025955 @ danRer10
Exon Skipping
Gene
ENSDARG00000024744 | dpp6b
Description
dipeptidyl-peptidase 6b [Source:ZFIN;Acc:ZDB-GENE-070705-88]
Coordinates
chr2:12737619-12742605:-
Coord C1 exon
chr2:12742558-12742605
Coord A exon
chr2:12741975-12742087
Coord C2 exon
chr2:12737619-12737672
Length
113 bp
Sequences
Splice sites
3' ss Seq
TGACATGTGTTGTGTTTTAGTGC
3' ss Score
9.88
5' ss Seq
AAGGTTTTA
5' ss Score
0.84
Exon sequences
Seq C1 exon
ATACTTTTTGAGCACAGAAGACGGTGCAAGTCGGCGTCAGCTTTACAG
Seq A exon
TGCTAACACCACAGGATCCTTCAACCGCCGCTGCCTTTCCTGTAATTTCCGTTGTGGCTACGTCAGTGGATCATTCAGTCCAGACGCAAACTACTTCTTTCTCAACTGCAAAG
Seq C2 exon
GTCCCGGTGTGCCTCACTCAGCCGTGTACAGCACCAGATATGGACAGTATGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000024744-'19-19,'19-18,20-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(4.4=100)
A:
PF0093016=DPPIV_N=FE(10.4=100)
C2:
PF0093016=DPPIV_N=PD(1.4=26.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTTTGAGCACAGAAGACGGT
R:
TCATACTGTCCATATCTGGTGCTG
Band lengths:
98-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]