RnoEX6012099 @ rn6
Exon Skipping
Gene
ENSRNOG00000030547 | Dpp6
Description
dipeptidyl peptidase like 6 [Source:RGD Symbol;Acc:68402]
Coordinates
chr4:4050550-4085724:-
Coord C1 exon
chr4:4085677-4085724
Coord A exon
chr4:4081330-4081448
Coord C2 exon
chr4:4050550-4050597
Length
119 bp
Sequences
Splice sites
3' ss Seq
CTGGCTCTTTGCTCTTCCAGCGC
3' ss Score
10.15
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CTATTTCCTAAGCACAGAGGACCTGCCACGAAGACGACACCTCTACAG
Seq A exon
CGCCAACACGGTAGACGACTTCAACAGGCAGTGTCTGTCATGTGACCTGGTGGAGAACTGCACCTATGTCAGTGCTTCCTTCAGTCATAACATGGACTTCTTCCTGCTCAAGTGTGAAG
Seq C2 exon
GCCCTGGCGTACCCACTGTTACTGTGCACAATACCACGGATAAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030547-'33-45,'33-39,34-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.176
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(4.4=100)
A:
PF0093016=DPPIV_N=FE(10.9=100)
C2:
PF0093016=DPPIV_N=PD(1.4=29.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTAAGCACAGAGGACCTGC
R:
TCTCTTATCCGTGGTATTGTGCAC
Band lengths:
90-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]