MmuEX6016488 @ mm9
Exon Skipping
Gene
ENSMUSG00000061576 | Dpp6
Description
dipeptidylpeptidase 6 [Source:MGI Symbol;Acc:MGI:94921]
Coordinates
chr5:27991253-28023437:+
Coord C1 exon
chr5:27991253-27991300
Coord A exon
chr5:27992950-27993068
Coord C2 exon
chr5:28023390-28023437
Length
119 bp
Sequences
Splice sites
3' ss Seq
TTGGCTCTTTGCTCTTCCAGTGC
3' ss Score
9.26
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CTATTTCCTGAGCACAGAAGACCTGCCACGGAGACGACATCTCTACAG
Seq A exon
TGCCAACACGGTAGATGACTTCAACAGGCAGTGTCTGTCATGTGACTTGGTGGAGAACTGCACCTATGTCAGCGCTTCTTTCAGCCATAACATGGACTTCTTCCTGCTCAAGTGTGAAG
Seq C2 exon
GCCCTGGCGTACCCACTGTTACTGTGCATAACACCACGGACAAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061576-'23-28,'23-26,24-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.176
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(4.4=100)
A:
PF0093016=DPPIV_N=FE(10.9=100)
C2:
PF0093016=DPPIV_N=PD(1.4=29.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGAGCACAGAAGACCTGC
R:
TCTCTTGTCCGTGGTGTTATGC
Band lengths:
90-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: