DreEX6093928 @ danRer10
Exon Skipping
Gene
ENSDARG00000076826 | dpp6a
Description
dipeptidyl-peptidase 6a [Source:ZFIN;Acc:ZDB-GENE-090918-4]
Coordinates
chr24:6687516-6692258:-
Coord C1 exon
chr24:6692211-6692258
Coord A exon
chr24:6691237-6691355
Coord C2 exon
chr24:6687516-6687563
Length
119 bp
Sequences
Splice sites
3' ss Seq
TGTGTCTGTGGTTGTTCCAGCGC
3' ss Score
8.81
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
ATATTTCCTCAGCACTGAGGATGACCCTAAAAGAAGACATCTCTACAG
Seq A exon
CGCAGACACAGTGGGCACTTTCAACCGCCGCTGTCTGTCCTGTGACTTCACTGATAGCTGTGGGTACGTCAGCGGCTCCTTTAGTCCCACCATGGACTACTTCCTGCTCAACTGTAAAG
Seq C2 exon
GTCCTGGAGTTCCATATGCTGCAGTTTACAGCACACATTATAGACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076826-'16-18,'16-16,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(4.4=100)
A:
PF0093016=DPPIV_N=FE(10.9=100)
C2:
PF0093016=DPPIV_N=PD(1.4=29.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCACTGAGGATGACCC
R:
GTCTATAATGTGTGCTGTAAACTGCA
Band lengths:
85-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]