GgaEX1020901 @ galGal3
Exon Skipping
Gene
ENSGALG00000006314 | DPP6
Description
NA
Coordinates
chr2:7547706-7564494:+
Coord C1 exon
chr2:7547706-7547753
Coord A exon
chr2:7549867-7549985
Coord C2 exon
chr2:7564447-7564494
Length
119 bp
Sequences
Splice sites
3' ss Seq
TTATATTAACTTTTTTTCAGTGC
3' ss Score
7.8
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
TTATTTCCTCAGCACGGAAGATTTGCCAAGAAGGCGGCATTTATACAG
Seq A exon
TGCGAGCACAAATGGAAACTTCAACAGGCAGTGTCTGTCTTGTGATCTGATTGAAAACTGTACCTATTTCAGTGCATCATTCAGTCACAACCTGGAATACTTCCTACTGACATGTGAAG
Seq C2 exon
GTCCCCGGGTTCCGATGGTGACTGTTCACAGCACAGCTGATGCACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006314-'15-18,'15-17,16-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(4.4=100)
A:
PF0093016=DPPIV_N=FE(10.9=100)
C2:
PF0093016=DPPIV_N=PD(1.4=29.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCAGCACGGAAGATTTGC
R:
TCTGTGCATCAGCTGTGCT
Band lengths:
91-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]