DreEX6026772 @ danRer10
Exon Skipping
Gene
ENSDARG00000077201 | myo7bb
Description
myosin VIIBb [Source:ZFIN;Acc:ZDB-GENE-070912-482]
Coordinates
chr2:23234679-23237218:-
Coord C1 exon
chr2:23237055-23237218
Coord A exon
chr2:23236748-23236929
Coord C2 exon
chr2:23234679-23234803
Length
182 bp
Sequences
Splice sites
3' ss Seq
CCCTTCACCCCTCCGTTCAGAGG
3' ss Score
6.88
5' ss Seq
CTGGTAAAC
5' ss Score
4.14
Exon sequences
Seq C1 exon
TGAGGACAGGTCTGGTGGGTTGGTGTGTTTGACGACTCCAAAGGGGATGTATGAGCTGAAGATTGTGAAAGGAAAAGAATTAGTGGAACTGGTCAACATGTTCATCTCAGGCCTTAAAGAGAGATCCATGTACGCTGTGGCAATTCAAGACCTCAGCAGACAAG
Seq A exon
AGGATCCCACATTGCTGAGCTACAGACGAGGCGATGTGCTGTATATCATAAAGGATGGAGAATATTCTCTCGAAGAAGGGTGGATAAAAGCAAGGAACGAGAGGACAAGTCAAACTGGGGCAGTTTCCTTAGATGCAATTCAGATTCTGCCCATGTTGACCAGGCCTACAGAAGAGACACTG
Seq C2 exon
AATTTGCTGAATTTGAGCCCAGCACGGAGGAAGTCAGTGATGCCGGTGTTGCCGCAGAAGGAGGAGCTCAGCACAGAGAGAGTGGCCCACATGACGCTCAAGGAGTTCTCCTTTGATTATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077201-'36-39,'36-37,37-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.071
Domain overlap (PFAM):
C1:
PF0765312=SH3_2=PU(18.3=19.6)
A:
PF0765312=SH3_2=PD(80.0=78.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTGGTGTGTTTGACGACT
R:
AACTCCTTGAGCGTCATGTGG
Band lengths:
255-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]