DreEX6029187 @ danRer10
Exon Skipping
Gene
ENSDARG00000036626 | sema6ba
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6Ba [Source:ZFIN;Acc:ZDB-GENE-131024-1]
Coordinates
chr2:49571360-49579162:+
Coord C1 exon
chr2:49571360-49571491
Coord A exon
chr2:49573458-49573607
Coord C2 exon
chr2:49578983-49579162
Length
150 bp
Sequences
Splice sites
3' ss Seq
TGGATTTGTTACTCTCTAAGGCC
3' ss Score
3.89
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
Exon sequences
Seq C1 exon
CATCCCCGGCTCTGCGGTGTGTGCGTTTGACATGCAGCAGCTGGCACGTGTGTTTGAGGGCAGATTCAAAGAGCAGAAATCACCAGAATCCATATGGACACCAGTACCTGATGAACTGGTGCCAAGACCCAG
Seq A exon
GCCTGGAGGATGTGCTGTCCAGGGCTCCAGATTCAGCACCTCCAACACCCTCCCTGACGAAGTGCTTAATTTCATCAAAATCCATCCTCTGATGGACGAAGCGGTTCCTTTGTTAGGACACAGACCCTGGATAGTCAAGACCATGGTCCG
Seq C2 exon
GTACCAGTTGAACACTATGGTGGTGGACACCGAGGCAGGCCCTCATCGCAATCGTACTGTGGTTTTCCTCGGTTCTACTAGGGGAACCGTCCTTAAGTTCCTCATCACACCCAGCCCGGAGAACCAATACTCCAATACCAATACATTCCTGGAAGAGCTGGAGGGATACAACCCTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036626-'9-12,'9-11,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.178 A=0.137 C2=0.115
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(10.3=100)
A:
PF0140314=Sema=FE(11.7=100)
C2:
PF0140314=Sema=FE(14.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGTGTGTTTGAGGGCAGAT
R:
CCCTCCAGCTCTTCCAGGAAT
Band lengths:
253-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]