GgaEX0001276 @ galGal4
Exon Skipping
Gene
ENSGALG00000001171 | SEMA6B
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B [Source:HGNC Symbol;Acc:HGNC:10739]
Coordinates
chr28:2498569-2500125:-
Coord C1 exon
chr28:2499994-2500125
Coord A exon
chr28:2499502-2499651
Coord C2 exon
chr28:2498569-2498763
Length
150 bp
Sequences
Splice sites
3' ss Seq
TTGCCATGCCGTGGTGTCAGACC
3' ss Score
3.04
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
CATCCCCGGCTCGGCCGTGTGTGCCTTTGACATGACCCAAGTGGCCGCTGTCTTCGAGGGACGCTTCCGGGAGCAGAAATCACCGGAGTCCATCTGGACAGCCGTACCTGAGGACATGGTGCCAAAGCCCAG
Seq A exon
ACCCGGGTGCTGTGCGGCCCCGGGGATGCGCTACAACTCCTCCAGCACCTTCCCCGATGAGATCCTCACCTTTGTGAAGACTCACCCACTGATGGATGAAGCGGTGCCATCCCTGGGCAACGCGCCCTGGATTGTCCGCACAATGAGCCG
Seq C2 exon
GTACCAGCTCCGCAAGATTGTGGTAGACAACGCGGCAGGACCATGGGGCAACCACACCGTGGTCTTCCTGGGCTCCAGCACAGGCACCATCCTCAAGTTCCTCATCCATCCCAATGCCACCAGCAGCCCCGCACCTGCACCCCCCGGCAGCCAGAGTGTCTTCCTGGAGGAGTTTGAGACCTACCAGCCTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001171_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=0.000 C2=0.167
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(10.4=100)
A:
PF0140314=Sema=FE(11.8=100)
C2:
PF0140314=Sema=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGAAATCACCGGAGTCC
R:
CCCAGGCTGGTAGGTCTCAAA
Band lengths:
255-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]