HsaEX6092050 @ hg38
Exon Skipping
Gene
ENSG00000167680 | SEMA6B
Description
semaphorin 6B [Source:HGNC Symbol;Acc:HGNC:10739]
Coordinates
chr19:4548263-4550930:-
Coord C1 exon
chr19:4550799-4550930
Coord A exon
chr19:4550123-4550272
Coord C2 exon
chr19:4548263-4548445
Length
150 bp
Sequences
Splice sites
3' ss Seq
CACACCCTTGTCACCCCCAGGCC
3' ss Score
9.19
5' ss Seq
GAGGTCGGT
5' ss Score
5.44
Exon sequences
Seq C1 exon
CATCCCTGGCTCGGCTGTCTGCGCCTTTGACCTGACACAGGTGGCAGCTGTGTTTGAAGGCCGCTTCCGAGAGCAGAAGTCCCCCGAGTCCATCTGGACGCCGGTGCCGGAGGATCAGGTGCCTCGACCCCG
Seq A exon
GCCCGGGTGCTGCGCAGCCCCCGGGATGCAGTACAATGCCTCCAGCGCCTTGCCGGATGACATCCTCAACTTTGTCAAGACCCACCCTCTGATGGACGAGGCGGTGCCCTCGCTGGGCCATGCGCCCTGGATCCTGCGGACCCTGATGAG
Seq C2 exon
GCACCAGCTGACTCGAGTGGCTGTGGACGTGGGAGCCGGCCCCTGGGGCAACCAGACCGTTGTCTTCCTGGGTTCTGAGGCGGGGACGGTCCTCAAGTTCCTCGTCCGGCCCAATGCCAGCACCTCAGGGACGTCTGGGCTCAGTGTCTTCCTGGAGGAGTTTGAGACCTACCGGCCGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167680-'16-28,'16-27,18-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.289 A=0.059 C2=0.016
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(10.5=100)
A:
PF0140314=Sema=FE(11.9=100)
C2:
PF0140314=Sema=FE(14.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGGCAGCTGTGTTTGAAG
R:
TCCTCCAGGAAGACACTGAGC
Band lengths:
253-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains