RnoEX6038627 @ rn6
Exon Skipping
Gene
ENSRNOG00000045998 | Sema6b
Description
semaphorin 6B [Source:RGD Symbol;Acc:69278]
Coordinates
chr9:10946915-10948078:+
Coord C1 exon
chr9:10946915-10947046
Coord A exon
chr9:10947442-10947591
Coord C2 exon
chr9:10947896-10948078
Length
150 bp
Sequences
Splice sites
3' ss Seq
GACTCACTGTCTTCACCCAGGCC
3' ss Score
7.5
5' ss Seq
ACGGTCAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
CATCCCTGGCTCAGCTGTCTGTGCCTTTGACATGAACCAAGTGGCTGCTGTGTTTGAAGGCCGCTTCCGGGAGCAGAAGTCACCTGAGTCAATCTGGACCCCAGTGCCTGAGGACCAAGTACCACGGCCCAG
Seq A exon
GCCCGGGTGCTGTGCAGCGCCCGGTATGCAGTACAACGCATCCAATGCCCTTCCTGACGAGATTCTCAACTTTGTAAAGACCCACCCACTGATGGACGAAGCGGTGCCCTCCCTGGGCCACTCGCCTTGGATTGTGAGAACTCTGATACG
Seq C2 exon
GCACCAGCTGACCCGAGTGGCTGTGGATGTGGGTGCAGGCCCATGGGGCAATCAGACAATAGTCTTCCTTGGCTCTGAGGTTGGCACAGTCCTCAAATTCCTTGTGAAGCCCAATGCCAGTGTCTCAGGGACCACAGGGCCCAGCATCTTTTTGGAGGAGTTTGAGACCTACCGGCCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000045998-'16-15,'16-14,18-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.267 A=0.039 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(10.4=100)
A:
PF0140314=Sema=FE(11.8=100)
C2:
PF0140314=Sema=FE(14.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGTCTGTGCCTTTGACA
R:
GTCCCTGAGACACTGGCATTG
Band lengths:
253-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]