DreEX6049265 @ danRer10
Exon Skipping
Gene
ENSDARG00000061976 | sema6bb
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6Bb [Source:ZFIN;Acc:ZDB-GENE-081105-129]
Coordinates
chr8:18947189-18952320:-
Coord C1 exon
chr8:18952189-18952320
Coord A exon
chr8:18951931-18952080
Coord C2 exon
chr8:18947189-18947368
Length
150 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTGTGGATTTTTCAGGCC
3' ss Score
7.97
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
TATTCCTGGATCTGCGGTGTGTGCTTTCGACATGGAGCAGCTGGCTGGAGTGTTTGATGGAAGATTTAAAGAGCAGAAATCGCCTGAATCGATATGGACACCTGTTCCAGATGAGGCTCTGCCCAAACCGAG
Seq A exon
GCCGGGTGGTTGTGCCGTACAAGGCTCCAAATTCAACTCCTCCAACTCTTTCCCTGATGACATGCTAACGTTTGTCAAAACTCATCCACTGATGGATGAAGCCGTCCCATCTCTTGGCCAGAGACCATGGATTGTTAGGACCATGGTCAG
Seq C2 exon
ATACCAGCTCAACAAGATGGTGGTGGACACAAACGCCGGGCCTTATGGGAACCAGACAGTGCTTTTCCTGGGATCAAGCCGAGGAACCATCCTCAAATTTCTGGTCACCCCTAACAGGGATAACACCGTGACCAACAACAACGTGTTCCTTGAGGAATTTGAAGGCTACAACCCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061976-'12-20,'12-19,13-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.244 A=0.196 C2=0.012
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(10.5=100)
A:
PF0140314=Sema=FE(11.9=100)
C2:
PF0140314=Sema=FE(14.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTGTGCTTTCGACATGGA
R:
TGGTCACGGTGTTATCCCTGT
Band lengths:
251-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]