BtaEX6038924 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031658 | SEMA6B
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B [Source:HGNC Symbol;Acc:HGNC:10739]
Coordinates
chr7:20796215-20797589:+
Coord C1 exon
chr7:20796215-20796346
Coord A exon
chr7:20796917-20797066
Coord C2 exon
chr7:20797407-20797589
Length
150 bp
Sequences
Splice sites
3' ss Seq
AACCCCTCGCCCCCACCCAGGCC
3' ss Score
5.66
5' ss Seq
GCGGTCAGT
5' ss Score
6.52
Exon sequences
Seq C1 exon
CATCCCCGGCTCAGCTGTCTGCGCCTTTGACATGACACAGGTGGCTGCCGTGTTTGAGGGCCGCTTCCGTGAGCAGAAGTCCCCTGAGTCCATCTGGACACCCGTGCCAGAGGATCAGGTGCCGCGGCCCCG
Seq A exon
GCCCGGGTGCTGCGCAGCTCCTGGCATGCAGTACAATGCCTCGAGCGCCTTCCCAGACGAGATCCTCAACTTTGTCAAGACACACCCCCTGATGGACGAGGCCGTGCCCTCCCTGGGCCACGCACCCTGGATCGTTCGGACTCTGATGCG
Seq C2 exon
GCACCAGCTGACACGAGTGGCTGTGGACGTGGGCGCCGGCCCCTGGGGCAACCAGACTGTTATCTTCCTCGGGTCTGAGGCAGGCACGGTCCTCAAGTTCCTTGTCTGGCCCAACGCCAGTGCCTCGGGTACCACGGGACCCAGTGTCTTCCTGGAGGAATTTGAGACCTACCGGCCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031658-'11-16,'11-15,12-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.289 A=0.039 C2=0.016
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(10.4=100)
A:
PF0140314=Sema=FE(11.8=100)
C2:
PF0140314=Sema=FE(14.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCCGTGAGCAGAAGTCC
R:
GGCCGGTAGGTCTCAAATTCC
Band lengths:
247-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]