GgaEX0001276 @ galGal3
Exon Skipping
Gene
ENSGALG00000001171 | SEMA6B
Description
NA
Coordinates
chr28:2059979-2061530:-
Coord C1 exon
chr28:2061399-2061530
Coord A exon
chr28:2060907-2061056
Coord C2 exon
chr28:2059979-2060168
Length
150 bp
Sequences
Splice sites
3' ss Seq
TTGCCATGCCGTGGTGTCAGACC
3' ss Score
3.04
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
CATCCCCGGCTCGGCCGTGTGTGCCTTTGACATGACCCAAGTGGCCGCTGTCTTCGAGGGACGCTTCCGGGAGCAGAAATCACCGGAGTCCATCTGGACAGCCGTACCTGAGGACATGGTGCCAAAGCCCAG
Seq A exon
ACCCGGGTGCTGTGCGGCCCCGGGGATGCGCTACAACTCCTCCAGCACCTTCCCCGATGAGATCCTCACCTTTGTGAAGACTCACCCACTGATGGATGAAGCGGTGCCATCCCTGGGCAACGCGCCCTGGATTGTCCGCACAATGAGCCG
Seq C2 exon
GTACCAGCTCCGCAAGATTGTGGTAGACAACGCGGCAGGACCATGGGGCAACCACACCGTGGTCTTCCTGGGCTCCAGCACAGGCACCATCCTCAAGTTCCTCATCCATCCCAATGCCACCAGCAGCCCCGCACCTGCACCCCCCGGCAGCCAGAGTGTCTTCCTGGAGGAGTTTGAGACCTACCAGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001171-'10-13,'10-12,11-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=0.000 C2=0.156
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(10.5=100)
A:
PF0140314=Sema=FE(11.9=100)
C2:
PF0140314=Sema=PD(14.7=96.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCGGGAGCAGAAATCACC
R:
GGCTGGTAGGTCTCAAACTCC
Band lengths:
258-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]