DreEX6030838 @ danRer10
Exon Skipping
Gene
ENSDARG00000070412 | mtmr7b
Description
myotubularin related protein 7b [Source:ZFIN;Acc:ZDB-GENE-050913-66]
Coordinates
chr1:15811747-15814875:-
Coord C1 exon
chr1:15814603-15814875
Coord A exon
chr1:15813941-15814060
Coord C2 exon
chr1:15811747-15811909
Length
120 bp
Sequences
Splice sites
3' ss Seq
ATGTATTGTTTTTATTGCAGGTG
3' ss Score
9.96
5' ss Seq
TGGGTAGGA
5' ss Score
5.12
Exon sequences
Seq C1 exon
GAGTTCGTATTGCGCGTGTGCGCTCTGTGTGTTGTCCACCGTGTACCAGTCTGTCTGAGCGCACAGCGGATCTCCGCACTGAGACCAGAACCACCATGGCTTGAATTACACTACCTGCCAACCATCCCATTGTCTGTTGTCATAACCAGCATGCGACCCCTCGCTCTCTTTTTTTGACCGGAAATAAAGGCGAATCCCCGGACGGTCCGGATTAATTTTCTGCGCATCATTTGGACGGGCGTCTTTAGGATGGAGCACATCAGAACACCAAAG
Seq A exon
GTGGAAAATGTGCGTATGATTGATCGACGGACTCCGAGGAAGGCTACAGTGGGAACATTATACCTCTCCTCTACTCACACTATATTTGTAGAGAACTCGGAAGCCCGCAAAGAGACCTGG
Seq C2 exon
GTTCTGCACAGTTTGGTGAGTAACGTGGAGAGACTCCCAACAAACCCATCAGGAAGTCCTGTCATTATCCGCTGCAAAAACTTCATTGTTTACAGACTGCTGATCCCACAAGAGAAGGACTGTTTAGATGTGGTGGCTTCCCTCACTCGTCTCTCACGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070412-'0-2,'0-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.453 A=0.150 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSDART00000169081fB3994
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATAAAGGCGAATCCCCGGAC
R:
TGAGAGACGAGTGAGGGAAGC
Band lengths:
247-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]