DreEX6031349 @ danRer10
Exon Skipping
Gene
ENSDARG00000000606 | dnah7l
Description
dynein, axonemal, heavy polypeptide 7 like [Source:ZFIN;Acc:ZDB-GENE-030616-623]
Coordinates
chr1:21503420-21506081:+
Coord C1 exon
chr1:21503420-21503555
Coord A exon
chr1:21503671-21503843
Coord C2 exon
chr1:21505891-21506081
Length
173 bp
Sequences
Splice sites
3' ss Seq
TTTTGTCCTTCTTTGTGCAGGGC
3' ss Score
10.84
5' ss Seq
AAGGTATCA
5' ss Score
7.22
Exon sequences
Seq C1 exon
GAACTGCCAGAGAAGCCAGAGGTGCCATGGCTGTCTGATTTTGCCTGGGAGACTTGTTGCAATCTGGAAGATCGACTTCCATGCTTTAATGGGATTAAAAAAGAGATAATATCCACACCCATCTCTGTCAAACTCG
Seq A exon
GGCAGCTGGAGGTAACAGTAAACCCGGAGCATTGGGATGGGTATGTGACTGACCTTCCTCCTTTTTCAGAAGAGATTCCCTCTGAGAAACAGCCACAAGTCAGAGGTCACTGGAACCAGCAGCTTGGGGCATTTCAGAAACTCATCCTTATCAAGAGTTTTATGGAGGAGAAG
Seq C2 exon
GTTGTGTCTGCCGTGACTGAGTTTGTTATCACTGGTTTGGGGCAACAATTTGTGGAGAATCCCCTAGTGGATCTTGCAACCCTGTATGCAGACATGTCTCCTTCCATTCCCCTGGTCTTCATCCTAAGCACAGGCTCAGATCCAATGGGAGCATTCCAGCGGTTTGCCAATGAGAAAGGATACCAGGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000606-'67-70,'67-68,68-70=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.103 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.0=100)
A:
PF0302810=Dynein_heavy=FE(10.2=100)
C2:
PF0302810=Dynein_heavy=FE(11.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTCTGATTTTGCCTGGGA
R:
TCCCATTGGATCTGAGCCTGT
Band lengths:
257-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]