HsaEX0020199 @ hg19
Exon Skipping
Gene
ENSG00000115423 | DNAH6
Description
dynein, axonemal, heavy chain 6 [Source:HGNC Symbol;Acc:2951]
Coordinates
chr2:84960568-84990069:+
Coord C1 exon
chr2:84960568-84960703
Coord A exon
chr2:84972204-84972373
Coord C2 exon
chr2:84989879-84990069
Length
170 bp
Sequences
Splice sites
3' ss Seq
TTTTTAAATTGTATTTCCAGGAT
3' ss Score
8.86
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
GAACGCCCACCTAAGCCTGAAGCTCCCTGGCTACCTACTGCTACATGGTTCGCATGCTGTGACTTGGAAGAATCATTTCCAGTTTTTCACGGACTTACCCAAAATATATTGTCACATCCTATTTCCATACGCTTAG
Seq A exon
GATCTTTTGAGACTTATATTAACCCACAGAAATGGGAAGGCTATTCTAAAATGAAACACGAAGATAAACACATGAGACAGGAAAAGGAGGCAGCACACCAAGATCCATGGAGTGCAGGATTGAGTTCTTTCCATAAGCTAATTCTTATTAAATGTTGTAAAGAAGAAAAG
Seq C2 exon
GTGGTTTTTGCTCTTACAGACTTTGTGATAGAAAATCTTGGAAAACAGTTTATAGAGACACCACCTGTGGACCTGCCTACCCTGTATCAAGACATGTCATGCAACACTCCCCTGGTATTCATCCTAAGCACAGGCTCAGATCCCATGGGTGCATTTCAGAGGTTTGCCAGGGAAAGTGGATATTCAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115423-'66-65,'66-64,67-65
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.246 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.0=100)
A:
PF0302810=Dynein_heavy=FE(7.4=100)
C2:
PF0302810=Dynein_heavy=FE(8.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTTCGCATGCTGTGACTT
R:
CCTCTGAAATGCACCCATGGG
Band lengths:
254-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)