RnoEX0028559 @ rn6
Exon Skipping
Gene
ENSRNOG00000015581 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:RGD Symbol;Acc:621797]
Coordinates
chr4:100973109-100980684:-
Coord C1 exon
chr4:100980549-100980684
Coord A exon
chr4:100977081-100977223
Coord C2 exon
chr4:100973109-100973299
Length
143 bp
Sequences
Splice sites
3' ss Seq
TTTTCAAATTGTCTTTCCAGGAT
3' ss Score
10.5
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GAGCGCCCTCCTAAGCCAGAAGCTCCCTGGCTGCCCATTCAGATGTGGTTCTCCTGCTGTGACCTAGAAGAATGGTTTCCAATTTTCGAAGGACTTACAAGACATATACTGTTGCATCCCATCTCTATATCCTTAG
Seq A exon
GATCTTTTGAGACCTACATTAACCCACAGAGCTGGGAAGGATACCCTAAGCAGAGACACGAAGAGGAAAAGGAACACGTTTGGGGATCGAACTTCAGCTCTTTCCATAAGTTAATTCTTGTTAAATGCTGTAAAGAAGAAAAG
Seq C2 exon
GTGGTTTTTGCTCTCACTGACTTTGTGATAGAGAATCTTGGCAAACAATTTATTGAGACACCTCCAGTGGACCTGGCCACTCTGTATCAGGACATGTCAAGCAGCACCCCACTGGTGTTTATCTTGAGCACAGGCTCTGATCCCATGGGTGCCTTTCAGAGGTTTGCCAGGGAGAGCGGGTATGCAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015581-'64-69,'64-68,65-69
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.021 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.0=100)
A:
PF0302810=Dynein_heavy=FE(6.3=100)
C2:
PF0302810=Dynein_heavy=FE(8.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTCTCCTGCTGTGACCTA
R:
GAAAGGCACCCATGGGATCAG
Band lengths:
248-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]