MmuEX6004959 @ mm9
Exon Skipping
Gene
ENSMUSG00000052861 | Dnahc6
Description
dynein, axonemal, heavy chain 6 [Source:MGI Symbol;Acc:MGI:107744]
Coordinates
chr6:72994671-73003786:-
Coord C1 exon
chr6:73003651-73003786
Coord A exon
chr6:72999033-72999175
Coord C2 exon
chr6:72994671-72994861
Length
143 bp
Sequences
Splice sites
3' ss Seq
TTTTAAATTCGTCTCTCCAGGAT
3' ss Score
10.29
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GAGCGCCCTCCCAAGCCAGAAGCCCCCTGGCTGCCCATTCAGATGTGGTTCTCGTGCTGTGATCTAGAAGAGTCATTTCCCATTTTTGAAGGACTTACAAAACATATACTGTTGCGTCCCATTTCCATAAAATTAG
Seq A exon
GATCTTTTGAGACCTATATTAACCCACCGGTCTGGGAAGGATACCCTAAACAGAGACACGAAGAGGAGAAGGACCATGTTTGGGGCTTAGACTTCAGCTCTTTCCATAAGCTAATTCTTGTTAAATGCTGTAAAGAAGAAAAG
Seq C2 exon
GTGGTTTTTGCTCTTACAGACTTTGTGATAGAGAATCTTGGCAAACAGTTTATTGAGACGCCTCCAGTGGACCTGGCCACTCTGTACCAGGACATGTCAAACAGCACGCCCCTGGTCTTTATCTTGAGCACAGGCTCTGATCCCATGGGCGCCTTTCAAAGGTTTGCCAGGGAGAGCGGGTATGCAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052861-'64-65,'64-64,65-65=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.0=100)
A:
PF0302810=Dynein_heavy=FE(6.3=100)
C2:
PF0302810=Dynein_heavy=FE(8.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCCCATTCAGATGTGGTT
R:
CATGGGATCAGAGCCTGTGC
Band lengths:
254-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: