DreEX6031366 @ danRer10
Exon Skipping
Gene
ENSDARG00000000606 | dnah7l
Description
dynein, axonemal, heavy polypeptide 7 like [Source:ZFIN;Acc:ZDB-GENE-030616-623]
Coordinates
chr1:21380965-21384352:+
Coord C1 exon
chr1:21380965-21381186
Coord A exon
chr1:21383966-21384113
Coord C2 exon
chr1:21384195-21384352
Length
148 bp
Sequences
Splice sites
3' ss Seq
AAGCATTTTGTGCATTTCAGTCT
3' ss Score
4.85
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
Exon sequences
Seq C1 exon
TTGTCCAGCGTAGGTGATTTATGGAGCGTCTATATGAACTTTGATATTAAATGTTTGGAGCCATGGGAAAGGATCATTCCCGTCTTCAGTTATAACAGTGAGATACCCTTCTTTGAGATGCTGGTACCCACCACAGACACAGTGAGGTACGGATACCTGATGGAAAAACTGCTGTCTGTCAATCACTCTGTCCTCTTCACTGGCATCACTGGTGTGGGAAAG
Seq A exon
TCTGTGGTGGCACGGGCACTGCTGAACAGTGTGCAGGAAAAGGCAGGTTATGTCCCCGTATATATCAACTTCTCAGCTCAAACTTCATCTGCCAGAACACAAGAGATTATTGAGTCAAAACTGGAGAAGAAGAGAAAGAACATACTTG
Seq C2 exon
GAGCTCCTGCTAATAAAAAGATTGTGGTGTTTGTGGATGATCTGAACATGCCAAAGCTGGACAGTTACGGCTCTCAGCCCCCTATAGAGCTGCTTAGACAATTCCAGGACTTTCATGGCTTCTATGACAGAGAAAAGTTCTTCTGGAAGGAGATACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000606-'41-43,'41-42,42-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(16.5=60.8)
A:
PF127752=AAA_7=FE(18.0=100)
C2:
PF127752=AAA_7=FE(19.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTGGAGCCATGGGAAAGG
R:
AGCCGTAACTGTCCAGCTTTG
Band lengths:
243-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]