RnoEX6013930 @ rn6
Exon Skipping
Gene
ENSRNOG00000015581 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:RGD Symbol;Acc:621797]
Coordinates
chr4:101037557-101041233:-
Coord C1 exon
chr4:101041012-101041233
Coord A exon
chr4:101039912-101040059
Coord C2 exon
chr4:101037557-101037714
Length
148 bp
Sequences
Splice sites
3' ss Seq
CATTCTTCTTTTGTTCAAAGTCT
3' ss Score
6.32
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
CTTCCCAGCTCTGGAGATCTGTGGAGCATTCATGTAGACTTTGACACCAAACGCCTGGACCCCTGGGAACGAATCATACCCACCTTCAAGTACAGCAGGGAGGTCCCGTTCTTTGAGATGCTTGTCCCAACAGCAGACACGGTGCGGTACGGCTATCTAATGGAAAAGCTGCTGGCGGTCAGGCACTCAGTGTTGTTTACTGGAACAACTGGAGTTGGCAAG
Seq A exon
TCTGTTATTGCAAAAGGATTGCTGAATAGGATTCAAGAATCAGCTGGCTATGTCCCTGTTTATCTAAATTTCTCTGCCCAAACCTCATCCGCAAGGACACAAGAGATCATTGAGTCAAAACTGGAACGAAAGAGAAAAAATATTTTAG
Seq C2 exon
GAGCACCAGGAAATAAACAAGTGGTGATTTTTGTTGATGATCTGAATATGCCCCGGCTGGATCGCTATGGCTCCCAACCACCGATTGAACTGCTTCGGCAGTATCAAGACTTTGGTGGATTCTATGATAGAAACAAACTCTTTTGGAAAGAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015581-'38-43,'38-42,39-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(16.5=60.8)
A:
PF127752=AAA_7=FE(18.0=100)
C2:
PF127752=AAA_7=FE(19.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGACACCAAACGCCTGGA
R:
CAGCCGGGGCATATTCAGATC
Band lengths:
243-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]