HsaEX6014182 @ hg19
Exon Skipping
Gene
ENSG00000115423 | DNAH6
Description
dynein, axonemal, heavy chain 6 [Source:HGNC Symbol;Acc:2951]
Coordinates
chr2:84896413-84899608:+
Coord C1 exon
chr2:84896413-84896634
Coord A exon
chr2:84897452-84897599
Coord C2 exon
chr2:84899451-84899608
Length
148 bp
Sequences
Splice sites
3' ss Seq
TTAACTTATTTTAATTTAAGTCT
3' ss Score
4.15
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
CTTCCCAATTCTGGTGATCTGTGGAGCATTCATATGGACTTTGACACCAAACGGCTGGATCCCTGGGAACGAATCATACCTACTTTCAAATACAACCGAGATGTTCCATTTTTTGAAATGCTTGTCCCCACAACTGACACAGTGCGCTATGGGTATCTAATGGAAAAACTACTGGCAGTCAAGCATTCCGTGTTGTTTACTGGAATAACTGGAGTGGGCAAG
Seq A exon
TCTGTGATTGCAAAAGGATTGCTAAATAAAATTCAAGAATCAGCTGGCTATGTCCCTGTTTATCTAAATTTTTCTGCTCAAACTTCATCTGCAAGGACACAAGAGATCATTGAGTCAAAACTGGAGAGAAAAAGAAAAAATATTCTAG
Seq C2 exon
GAGCACCGGGAAACAAACGAATTGTGATTTTTGTTGATGATTTAAACATGCCCAGACTGGATCGCTATGGCTCTCAGCCTCCGATTGAATTACTTCGGCAGTATCAAGATTTTGGGGGATTTTATGACAGAAACAAACTGTTTTGGAAAGAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115423-'41-41,'41-40,42-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(16.5=60.8)
A:
PF127752=AAA_7=FE(18.0=100)
C2:
PF127752=AAA_7=FE(19.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACACCAAACGGCTGGATC
R:
ATAGCGATCCAGTCTGGGCAT
Band lengths:
250-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)