MmuEX0015007 @ mm10
Exon Skipping
Gene
ENSMUSG00000052861 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:MGI Symbol;Acc:MGI:107744]
Coordinates
chr6:73118002-73122001:-
Coord C1 exon
chr6:73121780-73122001
Coord A exon
chr6:73120535-73120682
Coord C2 exon
chr6:73118002-73118159
Length
148 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTTTTTATTCAAAGTCC
3' ss Score
6.66
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
Exon sequences
Seq C1 exon
CTTCCCAGCTCTGGAGATCTGTGGAGCATTCATATAGACTTTGACACCAAACGCCTGGACCCCTGGGAGCGCATTATACCCACCTTCAAGTACAGCAGGGATGTCCCATTCTTTGAGATGCTTGTCCCCACAACAGACACAGTGCGCTATGGCTATCTAATGGAAAAGCTGCTGGCCGTCAGGCATTCGGTGTTGTTTACGGGAACAACTGGCGTTGGCAAG
Seq A exon
TCCGTTATTGCAAAAGGATTGCTGAATAGAATTCAAGAATCAGCTGGCTATGTCCCTGTTTATCTAAATTTTTCTGCCCAAACTTCATCTTCAAGGACACAGGAGATCATTGAGTCAAAACTGGAACGAAAGAGAAAAAATATTCTAG
Seq C2 exon
GAGCACCAGGAAATAAACAAGTGGTGATTTTTGTTGATGATCTGAATATGCCCCGGCTGGACCGCTATGGCTCCCAACCACCAATTGAACTGCTTCGGCAGTATCAAGATTTTGGTGGATTCTATGATAGAAACAAACTCTTTTGGAAAGAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052861-'42-44,'42-43,43-44
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.060 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(16.5=60.8)
A:
PF127752=AAA_7=FE(18.0=100)
C2:
PF127752=AAA_7=FE(19.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGAGCGCATTATACCCAC
R:
TTCAATTGGTGGTTGGGAGCC
Band lengths:
249-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types