DreEX6031637 @ danRer10
Exon Skipping
Gene
ENSDARG00000088202 | sh3d19
Description
SH3 domain containing 19 [Source:ZFIN;Acc:ZDB-GENE-050522-481]
Coordinates
chr1:23715713-23721384:-
Coord C1 exon
chr1:23720473-23721384
Coord A exon
chr1:23720261-23720374
Coord C2 exon
chr1:23715713-23715801
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTAATGTGCCCCACTCACAGACC
3' ss Score
8.08
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
CATCCGCTCAAGAATCCAAGCCTTTGAAAGTCAAGCTGCCACAGAGAATGATGCAGCCTCTGTGCCTTTTCCACGTCCACGAAAAATTGGTGCTAAACCACCTATTCTGGCACCAAAACCCTCCATTGCCCCACGGCCCTCAGTCATAAAGCCTAAAGAAGAGCCGTTTTCACAATTTGACAGTCACTTATATGAAGAACTTGACATGGAACCTACACCAGCTCCAAGGCCGCAACTTTTTAAAAAACCATCCTTGGATTCAAGAGAAGAGTCTGACTCTCAGCCTTTTTTCAAAACAGCCCTTACTTCTCGACCCTCATTGGTCAAACATAAGAATGTATATTCCCAAGATGAAGAAGTGGTTGTCAAAGGACCTATTCCACCACTCAAGCCCAGTAAAGACCTGCTGAACGCCAACAATCACAACTCCACTGCTCTTCTGCCTGATCTCACATCCGCAGTGAACGTGCTAAGCAATGACTATGTGGATACTTCCATTA
Seq A exon
ACCACTCACCCACTAAACCTGTCCGTCAAGGGGGATTCTCCTACATGGGAGGGAATACACAGGCGGTGACCAGGAGACCCACAGTCATCAGAGTCCCCAGTAAAACTGACAAAA
Seq C2 exon
ACTCTGAAGAGGCAGTAGAGTTTCCTCCTCCTTTACCTGTACAGAAGGCTGTGGGCAGCACACCTACACCTGCTAAAGCCTTTCGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088202-'11-13,'11-10,12-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.873 A=0.987 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCTTACTTCTCGACCCTC
R:
GCCTTCTGTACAGGTAAAGGAGG
Band lengths:
252-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]