MmuEX0042173 @ mm9
Exon Skipping
Gene
ENSMUSG00000028082 | Sh3d19
Description
SH3 domain protein D19 [Source:MGI Symbol;Acc:MGI:1350923]
Coordinates
chr3:85888356-85902181:+
Coord C1 exon
chr3:85888356-85889279
Coord A exon
chr3:85897612-85897719
Coord C2 exon
chr3:85902069-85902181
Length
108 bp
Sequences
Splice sites
3' ss Seq
TAAACTATGTTTTTCATTAGATC
3' ss Score
6.33
5' ss Seq
AATGTAAGC
5' ss Score
6.12
Exon sequences
Seq C1 exon
TTCTGGGGAATGGGACACATGGGCCGAAAACAGGCTCAAGGTGACTTCCAGAGAAGGGCTCACGCCATACTCATCGCCACAAGAAGCCGGAATCACCCCAGTAACCAAACCTGAATTGCCAAAGAAACCAACTCCTGGCCTTACACGAAGCGTGAACCATGAGACTTCTGGAGGAAGACCCATGGCGGAGAGCCCCGATACGGGGAAGAAAATCCCAACTCCTGCTCCCCGGCCTTTGCTGCCGAAAAAATCAGCCTCCACAGATGCCCCACCGTACCCTTCGATTCCACCGAAACTGGTTTCTGCCCCGCCCCGACTCTCAGTAGCATCACAAGCCAAAGCGTTCCGGTCACTTGGAGAAGGGCTGCCATCCAATCCCCCAGTTCCAGCACCACAGAGCAAAGCCCTGGGGGACATCGACCTCATCAGCTTTGACGATGACGTATTGCCCACCTCGGGGAGCCCAGCTGAAGAACCCACAGGTTCTGAGACGGTTCTAG
Seq A exon
ATCCCTTTCAGCTCCCCACAAAAACAGAAGCAACAAAAGAAAGAGCCGTTCAGCCGGCGCCCACCAGGAAGCCTACTGTAATACGAATCCCAGCCAAACCAGGAAAAT
Seq C2 exon
GTTTACATGAGGAACCACAAAGCCCACCTCCTCTTCCTGCCGAAAAGCCAGTTGGGAATACTCACAGTGCAGTGTCTGGAAGGCCCAGTCACTCTGACAGAACTAGAAACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028082_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACCGAAACTGGTTTCTGC
R:
GAAGAGGAGGTGGGCTTTGTG
Band lengths:
251-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: