GgaEX1052325 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr4:34390612-34402809:-
Coord C1 exon
chr4:34402276-34402809
Coord A exon
chr4:34393980-34394087
Coord C2 exon
chr4:34390612-34390724
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTGGGTTTTTTCCCTTATAGATC
3' ss Score
9.88
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
AGGAGACTGGGATGCATGGACAGAAAGCAAACCAACACCTTCCTCCAGAGAATTGCAGCTTCAACCTGAAGCAGCTGGGAGTAGTGTTGTAGCCAAACCTGAACTGCCAAAGAAACCAAAACCTGGCCTTGTAAAAAGTAGTAGTAGCGATTTTCTCAATGCAAAAAGCAGCTCAGTGGCAGAGAACAGCAACGAACAAAGAAAGTTTCCTGTTCCTGCTCCGAGGCCTCTTATTTCTAAAAAGTCACATTCTGCAGAATATCCTGCCCTTTCTTTGGTCCCTCTGAAACCAATCTCTGCTCCACCACGGACTTCTGTATCAGCCCAAGAAAAAGTTTTCAAGTCTCTGGGGGAATTGTCACCCGCAGAGAACTCCTCAGCACCTGCTTTGCAGAGTAAGCTAGATCTGGGAGGAGATCTGATCAGTTTTGATGACGATGTTTTGCCCCTAAGTCCACCCTGTGCTGTTAAAGATAGCATCAGTTGTGAAGCAGCAGCAG
Seq A exon
ATCCATTCCAGTTTCTTCCCAAAATCGAACCGGCAAAGGAACAGGCAGCTCAACCAGCTTTAGCACGGAAACCCACTGTTATCCGAATCCCAGCTAAACCTGGAAAAT
Seq C2 exon
CTTTAGATGAAATCCCACATAGCCCTCCACCTCTTCCTGCCGAAAAGCCTATTGGCAACACCTCTGACATCACAGCGGGCAAACCCAACAGTGGTGACCTAGTAAAAAACGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010081-'4-9,'4-5,5-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.674 A=0.811 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGACTTCTGTATCAGCCCA
R:
CCAATAGGCTTTTCGGCAGGA
Band lengths:
249-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]