RnoEX0080456 @ rn6
Exon Skipping
Gene
ENSRNOG00000011752 | Sh3d19
Description
SH3 domain containing 19 [Source:RGD Symbol;Acc:1304885]
Coordinates
chr2:185393441-185405833:+
Coord C1 exon
chr2:185393441-185394131
Coord A exon
chr2:185403398-185403505
Coord C2 exon
chr2:185405721-185405833
Length
108 bp
Sequences
Splice sites
3' ss Seq
TAAACTATGTTTTTCATTAGATC
3' ss Score
6.33
5' ss Seq
AATGTAAGC
5' ss Score
6.12
Exon sequences
Seq C1 exon
TTCTGGAGAATGGGACTCGTGGGCGGAAAACAGGCTCAAGGTGACTTCCAGAGAAGGGCTCACCTCATACTCATCGCCACAAGAAGCCGGAATCACCCCAGTAACCAAACCTGAGTTGCCAAAGAAACCAACTCCTGGCCTTACACGAACCGCGAACCATGAGACTTCTGGAGGAAGACCCATGGCTGAGAGCCCTGATGCGGGGAAGAAAATCCCAACCCCTGCTCCCCGGCCTTTGCTGCCGAAGAAATCAGCCTCCCCAGATGCCCCACCGTACCCTTCGGTTCCACCAAAACTGGTTTCTGTTCCTCCCCGACTCTCAGTAACATCACAAGCCAAAGCATTCAGGTTACCTGGAGAAGGGCCGCCATCCAACCCCCCAGTTCCAGCTCCACAGAGCAAAGCCCTGGGAGACATCGACCTCATCAGCTTTGACGATGACGTATTGCCCACCTCCGGGAGCCCAGCTGAAGAACCCATTGGTTCTGAGATGGTTCTAG
Seq A exon
ATCCCTTTCAGCTCCCCACAAAAACAGAAGCAACAAAAGAAAGAGCGGTTCAGCCGGTGCCCACCAGGAAGCCTACTGTAATAAGAATCCCAGCCAAACCAGGAAAAT
Seq C2 exon
GTTTACACGAGGAACCACAAAGCCCACCTCCTCTTCCTGCCGAAAAGCCAGTTGGAAATACGTACAGTGTAGCGTCTGGAAGGCTCAGTAACTCTGACAGAACTAGAAACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011752_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGTTCCTCCCCGACTCTC
R:
GCTTTTCGGCAGGAAGAGGAG
Band lengths:
248-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]