GgaEX1052325 @ galGal4
Exon Skipping
Gene
ENSGALG00000010081 | SH3D19
Description
SH3 domain containing 19 [Source:HGNC Symbol;Acc:HGNC:30418]
Coordinates
chr4:32701570-32716606:-
Coord C1 exon
chr4:32715608-32716606
Coord A exon
chr4:32707312-32707419
Coord C2 exon
chr4:32701570-32701628
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTGGGTTTTTTCCCTTATAGATC
3' ss Score
9.88
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
AGGAGACTGGGATGCATGGACAGAAAGCAAACCAACACCTTCCTCCAGAGAATTGCAGCTTCAACCTGAAGCAGCTGGGAGTAGTGTTGTAGCCAAACCTGAACTGCCAAAGAAACCAAAACCTGGCCTTGTAAAAAGTAGTAGTAGCGATTTTCTCAATGCAAAAAGCAGCTCAGTGGCAGAGAACAGCAACGAACAAAGAAAGTTTCCTGTTCCTGCTCCGAGGCCTCTTATTTCTAAAAAGTCACATTCTGCAGAATATCCTGCCCTTTCTTTGGTCCCTCTGAAACCAATCTCTGCTCCACCACGGACTTCTGTATCAGCCCAAGAAAAAGTTTTCAAGTCTCTGGGGGAATTGTCACCCGCAGAGAACTCCTCAGCACCTGCTTTGCAGAGTAAGCTAGATCTGGGAGGAGATCTGATCAGTTTTGATGACGATGTTTTGCCCCTAAGTCCACCCTGTGCTGTTAAAGATAGCATCAGTTGTGAAGCAGCAGCAG
Seq A exon
ATCCATTCCAGTTTCTTCCCAAAATCGAACCGGCAAAGGAACAGGCAGCTCAACCAGCTTTAGCACGGAAACCCACTGTTATCCGAATCCCAGCTAAACCTGGAAAAT
Seq C2 exon
GATTTGAATCATTCAGAACAGGCTGGAGCATCTCAACTAGAACCTGCATTACCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010081_MULTIEX1-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.719 A=0.811 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000016385fB11886
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCAATCTCTGCTCCACCAC
R:
AGATGCTCCAGCCTGTTCTGA
Band lengths:
246-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]