DreEX6031819 @ danRer10
Exon Skipping
Gene
ENSDARG00000033345 | cntln
Description
centlein, centrosomal protein [Source:ZFIN;Acc:ZDB-GENE-090313-409]
Coordinates
chr1:26298385-26306338:-
Coord C1 exon
chr1:26306189-26306338
Coord A exon
chr1:26300511-26300644
Coord C2 exon
chr1:26298385-26298547
Length
134 bp
Sequences
Splice sites
3' ss Seq
TATTCAATGTCTTGTTTCAGAAT
3' ss Score
8.73
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GAAGCGAGGAGGCAAGCGCAGGAGTGTGAGGAGGAGGGCAGGCGTGCCCTACAGGAAGCCAGGCAACAATTAGATGCTCAGCACTCGGCCTCTCAGGCAGAGCTGGAGAGATTGCGGGACCAAGAGGCCGTCAGCAGTTCCAGAGTCAAG
Seq A exon
AATTTGGAAGAGGAAGTGTTCAGAAGCAGACAGGATTTGCTAGAGGCTCAGAGCCGCTCAACTGCTTTGTCCCTTCAGCTATCCTCAGTAGAACGAGAAAGAGCTGACAACGAACAACAACTCTGTCAAATCAA
Seq C2 exon
GCGTGAGCTCCAGGACCTGCAGTGTCTGTACAAGCAGAGCGTAGAACATGCAGGAGAACAGGCCCATCTTATTCAGCAGCTGGAGGGTCTTAACCTGGACACGCAAAGAGTCCTGCGCAGCCAGGAGGAGGCCCACACAGCGGACACCGTCTCTTACCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033345-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.740 A=0.089 C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGTGTGAGGAGGAGGG
R:
GACTCTTTGCGTGTCCAGGTT
Band lengths:
244-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]