MmuEX0011972 @ mm10
Exon Skipping
Gene
ENSMUSG00000038070 | Cntln
Description
centlein, centrosomal protein [Source:MGI Symbol;Acc:MGI:2443104]
Coordinates
chr4:84957000-84974025:+
Coord C1 exon
chr4:84957000-84957179
Coord A exon
chr4:84971131-84971264
Coord C2 exon
chr4:84973863-84974025
Length
134 bp
Sequences
Splice sites
3' ss Seq
TACAAGTGCTCTAACTTTAGGTC
3' ss Score
6.7
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GACGCCAAGGAGTGTGTACAGAGTAAAGAAGAGCAAAACAGATTGGTTATAAAAAACCTGGAAGAGGAAAATGAGAGATTACGAACACGCTGCACTGACCTGCTAAATGACCTGGAGAAACTGAGGAACCAGGAAGCACACTGGAGAAAAGAGAAACACAGTGTGGACACGAGAGTAAAG
Seq A exon
GTCCTTGAAGAAAATTTGATTGAAGCAAAGAAAGAAATTGAGTCAGCACAGACTAAATATAATGTTGTGTCACAACAGCTGAATAACAAACAGGCTGAACTTCTCCAAAAAGATATGGATATTACATTGATCAG
Seq C2 exon
GAAAGAGCTGCAGGAGCTGCAGAACGTGTACAAGCAGAACAGTGCCCACACAGCCCAGCAAGCAGACCTGATCCAGCAGCTCCAGGCTCTCAACATGGACACGCAGAAAGTCCTGAGGAACCAGGAAGACGTCCACACGGCCGAGAGCATGTCATACCAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038070-'10-22,'10-17,14-22=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.000 C2=0.385
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGCCAAGGAGTGTGTACAG
R:
CTGGATCAGGTCTGCTTGCTG
Band lengths:
256-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types