GgaEX1004999 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GI47]
Coordinates
chrZ:32663033-32677143:+
Coord C1 exon
chrZ:32663033-32663212
Coord A exon
chrZ:32669119-32669252
Coord C2 exon
chrZ:32676981-32677143
Length
134 bp
Sequences
Splice sites
3' ss Seq
TCTAAATGTTTTCTTTGCAGACA
3' ss Score
9.99
5' ss Seq
TAAGTAAGC
5' ss Score
5.66
Exon sequences
Seq C1 exon
GACACTGAGGAGTGTGCACAGAAGAAGGAAGAGCAAAACAGACTGGTTATAAAAAGCCTGGAGGAGGAAAATAAGGGATTAAATGCTTGCTGTGCTGACCTGCTAAATGACCTGGAGAAACTGAGGAAGCAGGAGGTACAATGGAAAGCAGAAAAATGTGGCAGTGATGCCAGAATAAAG
Seq A exon
ACATTGGAAACCAATTTAACGGTTGCAAGAGAACAACTAAAAGAGTTAAGCAGTAAATGCAGTAACTTGTCATCTCAGCTAGCGGTGAACCAGAAAGAACTCTCCCAAAAAGAATGTGATATGAACAGGACTAA
Seq C2 exon
GAAGGAGTTACAGGAGCTGCAGAATCTTTACAAACAAAACATTGCACATACGACACAGCAGGCTCAACTGATACACCAACTTCAGACTCTTAATACTGACACACAAAAAGTACTGAAGGAACAAGAAGATGTGCACACAACTGAAACAATATCATATCAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028298_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.011 C2=0.000
Domain overlap (PFAM):
C1:
PF061607=EzrA=FE(41.8=100),PF078886=CALCOCO1=PU(41.7=58.3)
A:
PF061607=EzrA=PD(24.8=77.8),PF078886=CALCOCO1=FE(52.4=100)
C2:
PF093116=Rab5-bind=PD(39.0=94.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGAGGAGTGTGCACAGAA
R:
GTTGAGCCTGCTGTGTCGTAT
Band lengths:
246-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]